r"""
Leaky integrators describe a *leaky* neuron membrane that integrates
incoming currents over time, but never spikes. In other words, the
neuron adds up incoming input current, while leaking out some of it
in every timestep.
.. math::
\begin{align*}
\dot{v} &= 1/\tau_{\text{mem}} (v_{\text{leak}} - v + i) \\
\dot{i} &= -1/\tau_{\text{syn}} i
\end{align*}
The first equation describes how the membrane voltage (:math:`v`, across
the membrane) changes over time. A constant amount of current is *leaked*
out every timestep (:math:`v_{\text{leak}}`), while the current
(:math:`i`) is added.
The second equation describes how the current flowing into the neuron
changes in every timestep.
Notice that both equations are parameterized by the *time constant*
:math:`\tau`. This constant controls how *fast* the changes in voltage
and current occurs. A large time constant means a small change.
In Norse, we call this parameter the *inverse* to avoid having to
recalculate the inverse (:math:`\tau_{\text{mem_inv}}` and
:math:`\tau_{\text{syn_inv}}` respectively).
So, for Norse a large inverse time constant means *rapid* changes while
a small inverse time constant means *slow* changes.
Recall that *voltage* is the difference in charge between two points (in
this case the neuron membrane) and *current* is the rate of change or the
amount of current being added/subtracted at each timestep.
See :mod:`norse.torch.functional.leaky_integrator` and
`Wikipedia <https://en.wikipedia.org/wiki/Leaky_integrator>`_.
"""
from typing import Optional, Tuple
import torch
import torch.jit
import numpy as np
from norse.torch.module.snn import SNN, SNNCell
from ..functional.leaky_integrator import (
li_step,
li_feed_forward_step,
LIState,
LIParameters,
)
[docs]class LICell(SNNCell):
r"""Cell for a leaky-integrator *without* recurrence.
More specifically it implements a discretized version of the ODE
.. math::
\begin{align*}
\dot{v} &= 1/\tau_{\text{mem}} (v_{\text{leak}} - v + i) \\
\dot{i} &= -1/\tau_{\text{syn}} i
\end{align*}
and transition equations
.. math::
i = i + w i_{\text{in}}
Parameters:
p (LIParameters): parameters of the leaky integrator
dt (float): integration timestep to use
"""
[docs] def __init__(self, p: LIParameters = LIParameters(), **kwargs):
super().__init__(
activation=li_feed_forward_step,
state_fallback=self.initial_state,
p=p,
**kwargs,
)
def initial_state(self, input_tensor: torch.Tensor) -> LIState:
state = LIState(
v=self.p.v_leak.detach(),
i=torch.zeros(
*input_tensor.shape,
device=input_tensor.device,
dtype=input_tensor.dtype,
),
)
state.v.requires_grad = True
return state
[docs]class LI(SNN):
r"""A neuron layer that wraps a leaky-integrator :class:`LICell` in time, but
*without* recurrence. The layer iterates over the _outer_ dimension of the input.
More specifically it implements a discretized version of the ODE
.. math::
\begin{align*}
\dot{v} &= 1/\tau_{\text{mem}} (v_{\text{leak}} - v + i) \\
\dot{i} &= -1/\tau_{\text{syn}} i
\end{align*}
and transition equations
.. math::
i = i + w i_{\text{in}}
After application, the layer returns a tuple containing
(voltages from all timesteps, state from the last timestep).
Example:
>>> data = torch.zeros(10, 2) # 10 timesteps, 2 neurons
>>> l = LI()
>>> l(data) # Returns tuple of (Tensor(10, 2), LIState)
Parameters:
p (LIParameters): parameters of the leaky integrator
dt (float): integration timestep to use
"""
[docs] def __init__(self, p: LIParameters = LIParameters(), **kwargs):
super().__init__(
activation=li_feed_forward_step,
state_fallback=self.initial_state,
p=p,
**kwargs,
)
def initial_state(self, input_tensor: torch.Tensor) -> LIState:
state = LIState(
v=torch.full(
input_tensor.shape[1:], # Assume first dimension is time
self.p.v_leak.detach(),
device=input_tensor.device,
dtype=torch.float32,
),
i=torch.zeros(
*input_tensor.shape[1:],
device=input_tensor.device,
dtype=torch.float32,
),
)
state.v.requires_grad = True
return state
[docs]class LILinearCell(torch.nn.Module):
r"""Cell for a leaky-integrator with an additional linear weighting.
More specifically it implements a discretized version of the ODE
.. math::
\begin{align*}
\dot{v} &= 1/\tau_{\text{mem}} (v_{\text{leak}} - v + i) \\
\dot{i} &= -1/\tau_{\text{syn}} i
\end{align*}
and transition equations
.. math::
i = i + w i_{\text{in}}
Parameters:
input_size (int): Size of the input. Also known as the number of input features.
hidden_size (int): Size of the hidden state. Also known as the number of input features.
p (LIParameters): parameters of the leaky integrator
dt (float): integration timestep to use
"""
[docs] def __init__(
self,
input_size: int,
hidden_size: int,
p: LIParameters = LIParameters(),
dt: float = 0.001,
):
super().__init__()
self.input_size = input_size
self.hidden_size = hidden_size
self.p = p
self.dt = dt
self.input_weights = torch.nn.Parameter(
torch.randn(hidden_size, input_size) / np.sqrt(input_size)
)
def forward(
self, input_tensor: torch.Tensor, state: Optional[LIState] = None
) -> Tuple[torch.Tensor, LIState]:
if state is None:
state = LIState(
v=self.p.v_leak.detach(),
i=torch.zeros(
(input_tensor.shape[0], self.hidden_size),
device=input_tensor.device,
dtype=input_tensor.dtype,
),
)
state.v.requires_grad = True
return li_step(
input_tensor,
state,
self.input_weights,
p=self.p,
dt=self.dt,
)
